RegAnalyst server has been developed for analysis of regulatory regions present in genomic sequences. MoPP (Motif Prediction Program) is an exhaustive motif discovery tool that is tailored to enumerate conserved degenerate oligonucleotide patterns. MyPatternFinder (MPF) is a program for detection of a user-defined 'motif' in DNA sequence by using an exact search method (Option A) or an alignment technique (Option B). MycoRegDB is currently the only available database of promoter/regulatory elements across various mycobacterial species [M. tuberculosis (strains H37Rv and CDC1551), M. bovis, M. leprae, M. smegmatis and M. avium subsp. paratuberculosis]. For each database entry, MycoRegDB gives a variety of useful information such as gene annotation, CDS positions, promoter/regulatory sequence [with Transcription Start Point (TSP) or binding site explicitly marked], TSP-CDS/Motif-CDS distance, and hyperlinks to reference(s). Wherever applicable, it also provides hyperlinks to gene information from TubercuList/BCGList/Leproma.

Sequence information sent to the server is confidential and deleted after 5 days of program execution.

If you use this web server please cite:
Sharma D, Mohanty D and Surolia A (2009) RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways. Nucleic Acids Res., 37, W193-W201.